Get results from source-out references¶

This Jupyter Notebook queries the catalog for source-out items in a predefined update range and download the related results into local subdirectories (under results)

The local directory of each results set is named as the related oozie WF ID

In [17]:

import owslib
from owslib.wps import monitorExecution
import uuid
from owslib.wps import WebProcessingService
import sys
import os
import lxml.etree as etree
import requests
import cioppy
ciop = cioppy.Cioppy()
import shapely
import dateutil.parser
from shapely.wkt import loads
import pandas as pd
import geopandas as gp
from datetime import datetime, timedelta
from io import BytesIO
from zipfile import ZipFile
import matplotlib.pyplot as plt
import gdal
import numpy as np
import requests

from nbconvert.preprocessors import ExecutePreprocessor, CellExecutionError
import nbformat as nbf

Read the data pipeline configuration information:

In [18]:

nb_config = os.path.join('..', 'configuration.ipynb')

nb = nbf.read(nb_config, 4)

exec(nb['cells'][0]['source']) in globals(), locals()

In [19]:

series = 'https://catalog.terradue.com/%s/series/source-out/search' % data_pipeline

In [20]:

update = '2018-10-19T08:00:00Z/2018-10-19T23:00:00Z'
search_params = dict([('count', '100'),('update', update)])

In [21]:

entry_search = ciop.search(end_point=series,
                           params=search_params,
                           output_fields='self,updated',
                           model='EOP')
for item in entry_search:
    print item

{'self': 'https://catalog.terradue.com//better-wfp-00004/series/source-out/search?format=atomeop&uid=LC08_L1TP_189051_20180929_20180929_01_RT', 'updated': '2018-10-19T08:35:47.1997480+00:00'}
{'self': 'https://catalog.terradue.com//better-wfp-00004/series/source-out/search?format=atomeop&uid=LC08_L1TP_189050_20180929_20180929_01_RT', 'updated': '2018-10-19T08:35:51.7231620+00:00'}
{'self': 'https://catalog.terradue.com//better-wfp-00004/series/source-out/search?format=atomeop&uid=LC08_L1TP_190051_20170816_20170825_01_T1', 'updated': '2018-10-19T09:39:06.8146100+00:00'}
{'self': 'https://catalog.terradue.com//better-wfp-00004/series/source-out/search?format=atomeop&uid=LC08_L1TP_190050_20170816_20170825_01_T1', 'updated': '2018-10-19T09:40:46.4655310+00:00'}

In [22]:

ns = {'a':'http://www.w3.org/2005/Atom',
      'b':'http://www.opengis.net/owc/1.0',
      'c':'http://www.opengis.net/wps/1.0.0',
      'd':'http://www.opengis.net/ows/1.1'}

In [23]:

headers = {'Authorization': 'Bearer %s' % access_token,
           'User-Agent': 'curl/t2Client'}

In [24]:

for item in entry_search[:]:
    stream = item['self']
    #Read the stream OWS Context document
    root = etree.fromstring(requests.get(stream).content)

    # Get the GetStatus URL
    getStatus_url = root.xpath('/a:feed/a:entry/b:offering/b:operation[@code="GetStatus"]',
                                 namespaces=ns)[0].attrib['href']

    res = requests.get(getStatus_url)

    # Read the status location content
    root2 = etree.fromstring(res._content)

    # Get the results reference URL
    ref_url = root2.xpath('//c:ProcessOutputs/c:Output/c:Reference', namespaces=ns)[0].attrib['href']

    # Get the process identifier:
    search_results = ciop.search(end_point=ref_url,
                         params=[],
                         output_fields='identifier,enclosure',
                         model='GeoTime')

    # Check the data to be downladed
    #for index, elem in enumerate(search_results):
    #    print(elem['enclosure'])

    # Create the local subdir
    wf = ref_url.split('/')[-1]
    print '*************************************************************'
    print ' Getting results fOR WF %s' %wf
    print '*************************************************************'

    results_dir = 'results/%s' %wf
    try:
        os.stat(results_dir)
    except:
        os.makedirs(results_dir)

    # Download the results to the local filesystem
    for elem in search_results:

        r = requests.get(elem['enclosure'], headers=headers)

        filename = elem['enclosure'][elem['enclosure'].rfind("/")+1:]

        out_path = os.path.join(results_dir,filename)

        print ('Download %s as %s' % (elem['enclosure'], out_path))

        open(out_path, 'wb').write(r.content)

    print "Results for entry %s (WF %s) downloaded " %(stream,wf)

*************************************************************
 Getting results fOR WF 0021381-180330140554685-oozie-oozi-W
*************************************************************
Download https://store.terradue.com/better-wfp-00004/_results/workflows/ec_better_ewf_wfp_01_02_02_ewf_wfp_01_02_02_0_5/run/71b82ee0-d377-11e8-8759-0242ac11000e/0021381-180330140554685-oozie-oozi-W/88882e31-f1b1-48a0-94ae-eba2accb75de/LC08_L1TP_189051_20180929_20181009_01_T1_BQA.TIF as results/0021381-180330140554685-oozie-oozi-W/LC08_L1TP_189051_20180929_20181009_01_T1_BQA.TIF
Download https://store.terradue.com/better-wfp-00004/_results/workflows/ec_better_ewf_wfp_01_02_02_ewf_wfp_01_02_02_0_5/run/71b82ee0-d377-11e8-8759-0242ac11000e/0021381-180330140554685-oozie-oozi-W/88882e31-f1b1-48a0-94ae-eba2accb75de/LC08_L1TP_189051_20180929_20181009_01_T1_MNDWI.TIF as results/0021381-180330140554685-oozie-oozi-W/LC08_L1TP_189051_20180929_20181009_01_T1_MNDWI.TIF
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Results for entry https://catalog.terradue.com//better-wfp-00004/series/source-out/search?format=atomeop&uid=LC08_L1TP_189051_20180929_20180929_01_RT (WF 0021381-180330140554685-oozie-oozi-W) downloaded
*************************************************************
 Getting results fOR WF 0021382-180330140554685-oozie-oozi-W
*************************************************************
Download https://store.terradue.com/better-wfp-00004/_results/workflows/ec_better_ewf_wfp_01_02_02_ewf_wfp_01_02_02_0_5/run/71de62f4-d377-11e8-bada-0242ac11000e/0021382-180330140554685-oozie-oozi-W/dc245e7b-6dc4-4774-840c-774ef7cdb59b/LC08_L1TP_189050_20180929_20181009_01_T1_BQA.TIF as results/0021382-180330140554685-oozie-oozi-W/LC08_L1TP_189050_20180929_20181009_01_T1_BQA.TIF
Download https://store.terradue.com/better-wfp-00004/_results/workflows/ec_better_ewf_wfp_01_02_02_ewf_wfp_01_02_02_0_5/run/71de62f4-d377-11e8-bada-0242ac11000e/0021382-180330140554685-oozie-oozi-W/dc245e7b-6dc4-4774-840c-774ef7cdb59b/LC08_L1TP_189050_20180929_20181009_01_T1_MNDWI.TIF as results/0021382-180330140554685-oozie-oozi-W/LC08_L1TP_189050_20180929_20181009_01_T1_MNDWI.TIF
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